6H72
GI.1 human norovirus protruding domain in complex with Nano-94 and 2-fucosyllactose (2FL)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID29 |
Synchrotron site | ESRF |
Beamline | ID29 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-11-12 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.976250 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 95.650, 112.310, 121.350 |
Unit cell angles | 90.00, 99.95, 90.00 |
Refinement procedure
Resolution | 49.350 - 2.300 |
R-factor | 0.1738 |
Rwork | 0.172 |
R-free | 0.20240 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2zl5 |
RMSD bond length | 0.003 |
RMSD bond angle | 0.698 |
Data reduction software | XDS (VERSION Nov 1, 2016) |
Data scaling software | XSCALE (VERSION Nov 1, 2016) |
Phasing software | PHASER |
Refinement software | PHENIX ((1.12_2829: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 49.350 | 2.380 |
High resolution limit [Å] | 2.300 | 2.300 |
Rmerge | 0.072 | 0.449 |
Rmeas | 0.088 | 0.558 |
Rpim | 0.051 | 0.327 |
Number of reflections | 54228 | 5273 |
<I/σ(I)> | 9.99 | 1.99 |
Completeness [%] | 96.3 | 94.35 |
Redundancy | 2.7 | 2.5 |
CC(1/2) | 0.996 | 0.736 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291 | 0.1 M sodium citrate (pH 5.5) and 20% (w/v) PEG3000 |