6H6L
Murine norovirus protruding domain (CW3 strain) in complex with the CD300lf receptor and glycochenodeoxycholate (GCDCA)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID29 |
Synchrotron site | ESRF |
Beamline | ID29 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-11-11 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 1.072270 |
Spacegroup name | P 41 |
Unit cell lengths | 87.000, 87.000, 276.810 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 46.710 - 2.500 |
R-factor | 0.1906 |
Rwork | 0.189 |
R-free | 0.21570 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5or7 |
RMSD bond length | 0.004 |
RMSD bond angle | 0.664 |
Data reduction software | XDS (VERSION Jun 1, 2017) |
Data scaling software | XSCALE (VERSION Jun 1, 2017) |
Phasing software | PHASER |
Refinement software | PHENIX ((1.13_2998: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 46.710 | 2.590 |
High resolution limit [Å] | 2.500 | 2.500 |
Rmerge | 0.103 | 0.810 |
Rmeas | 0.112 | 0.878 |
Rpim | 0.042 | 0.334 |
Number of reflections | 70179 | 6850 |
<I/σ(I)> | 14.68 | 2.46 |
Completeness [%] | 99.7 | 98.05 |
Redundancy | 6.9 | |
CC(1/2) | 0.998 | 0.784 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291 | 0.1 M Tris.HCl pH 8.5, 25 %(v/v) PEG 550 MME |