6H4W
Crystal structure of human KDM4A in complex with compound 19d
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | ROTATING ANODE |
| Source details | RIGAKU FR-X |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2017-07-14 |
| Detector | DECTRIS PILATUS 300K |
| Wavelength(s) | 1.5419 |
| Spacegroup name | P 1 21 1 |
| Unit cell lengths | 57.557, 101.487, 142.308 |
| Unit cell angles | 90.00, 99.07, 90.00 |
Refinement procedure
| Resolution | 48.920 - 2.810 |
| R-factor | 0.22 |
| Rwork | 0.218 |
| R-free | 0.26600 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 2oq7 |
| RMSD bond length | 0.010 |
| RMSD bond angle | 1.110 |
| Data reduction software | XDS |
| Data scaling software | Aimless |
| Phasing software | PHASER |
| Refinement software | BUSTER (2.10.3) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 48.920 | 2.920 |
| High resolution limit [Å] | 2.810 | 2.810 |
| Rmerge | 0.384 | 1.960 |
| Number of reflections | 39555 | 4429 |
| <I/σ(I)> | 7.5 | 0.9 |
| Completeness [%] | 100.0 | 100 |
| Redundancy | 8.5 | 7.6 |
| CC(1/2) | 0.942 | 0.381 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 293 | Crystallisation solution is 0.1M Bis-Tris-Propane pH7.5, 12-16% PEG-4000. Inhibitor is soaked in crystals by addition directly to the drops of DMSO dissolved compound |
