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6GRW

Glucuronoyl Esterase from Opitutus terrae (Au derivative)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsPETRA III, DESY BEAMLINE P11
Synchrotron sitePETRA III, DESY
BeamlineP11
Temperature [K]100
Detector technologyPIXEL
Collection date2017-08-26
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.979
Spacegroup nameP 1
Unit cell lengths43.693, 44.608, 50.558
Unit cell angles76.57, 67.17, 70.65
Refinement procedure
Resolution46.270 - 1.500
R-factor0.1355
Rwork0.135
R-free0.15850
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)Structure under deposition
RMSD bond length0.008
RMSD bond angle1.093
Data reduction softwareXDS (BUILT=20180126)
Data scaling softwareXSCALE
Phasing softwarePHENIX (1.13_2998)
Refinement softwarePHENIX (1.13_2998)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]46.2701.590
High resolution limit [Å]1.5001.500
Rmerge0.0420.314
Rmeas0.0500.370
Number of reflections508027975
<I/σ(I)>16.693.4
Completeness [%]95.993.3
Redundancy3.553.6
CC(1/2)0.9990.923
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP8293.15Reservoir composition for crystal growth: 0.03M Magnesium chloride, 0.03 M calcium chloride, 0.05M imidazole, 0.05M MES, 10% v/v MPD, 10% w/v PEG 1000, 10% v/w PEG 3500P. Heavy atom derivatization: 1.2uL crystallization mother liquor containing 0.5mM KAu(CN)2 added to drop containing crystals. Drop size and composition: Sitting drops of 0.4ul were mixed in a protein:reservoir volume ratio of 1:1 using 45 mg/mL of OtCE15A in 20 mM TRIS pH 8.0

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PDB entries from 2024-05-15

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