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6GR3

Structure of human Heat shock protein 90-alpha N-terminal domain (Hsp90-NTD) variant K112R in complex with AMPPNP

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I03
Synchrotron siteDiamond
BeamlineI03
Temperature [K]100
Detector technologyPIXEL
Collection date2018-02-19
DetectorDECTRIS PILATUS3 6M
Wavelength(s)0.9762
Spacegroup nameP 1 21 1
Unit cell lengths52.863, 41.722, 53.650
Unit cell angles90.00, 115.88, 90.00
Refinement procedure
Resolution47.610 - 1.880
R-factor0.16674
Rwork0.164
R-free0.21406
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2xk2
RMSD bond length0.012
RMSD bond angle1.950
Data reduction softwareXDS
Data scaling softwareSCALA
Phasing softwareMOLREP
Refinement softwareREFMAC (5.8.0222)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]48.2701.970
High resolution limit [Å]1.8701.870
Rmerge0.0510.323
Rmeas0.0630.402
Rpim0.0360.236
Number of reflections166972460
<I/σ(I)>12.73.2
Completeness [%]95.997.3
Redundancy2.52.4
CC(1/2)0.9980.876
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP291Precipitant: 25 % wt/vol PEG 2000, 200mM MgCl2, 100 mM sodium cacodylate, pH 6.5 Sample: Hsp90a-NTD K112R 20 mg/mL, 10 mM AMPPNP, 500 mM NaCl, 20 mM TRIS, pH 7.5

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PDB entries from 2024-05-15

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