6GPF
Structure of human Heat shock protein 90-alpha N-terminal domain (Hsp90-NTD) variant K112A in complex with AMPPNP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-02-19 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.976220 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 53.806, 42.199, 54.512 |
Unit cell angles | 90.00, 116.50, 90.00 |
Refinement procedure
Resolution | 48.780 - 1.550 |
R-factor | 0.17689 |
Rwork | 0.175 |
R-free | 0.21439 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2xk2 |
RMSD bond length | 0.017 |
RMSD bond angle | 2.317 |
Data reduction software | XDS |
Data scaling software | SCALA |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0222) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.780 | 1.630 |
High resolution limit [Å] | 1.550 | 1.550 |
Rmerge | 0.061 | 0.352 |
Rmeas | 0.071 | 0.415 |
Rpim | 0.036 | 0.216 |
Number of reflections | 31956 | 4630 |
<I/σ(I)> | 12 | 2.8 |
Completeness [%] | 99.8 | 99.7 |
Redundancy | 3.7 | 3.5 |
CC(1/2) | 0.997 | 0.878 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 291 | Precipitant: 25 % wt/vol PEG 2000,2 200mM MgCl2, 100 mM sodium cacodylate, pH 6.5 Sample: Hsp90a-NTD K112A 20 mg/mL, 10 mM AMPPNP, 500 mM NaCl, 20 mM TRIS, pH 7.5 |