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6GPF

Structure of human Heat shock protein 90-alpha N-terminal domain (Hsp90-NTD) variant K112A in complex with AMPPNP

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I03
Synchrotron siteDiamond
BeamlineI03
Temperature [K]100
Detector technologyPIXEL
Collection date2018-02-19
DetectorDECTRIS PILATUS3 6M
Wavelength(s)0.976220
Spacegroup nameP 1 21 1
Unit cell lengths53.806, 42.199, 54.512
Unit cell angles90.00, 116.50, 90.00
Refinement procedure
Resolution48.780 - 1.550
R-factor0.17689
Rwork0.175
R-free0.21439
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2xk2
RMSD bond length0.017
RMSD bond angle2.317
Data reduction softwareXDS
Data scaling softwareSCALA
Phasing softwareMOLREP
Refinement softwareREFMAC (5.8.0222)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]48.7801.630
High resolution limit [Å]1.5501.550
Rmerge0.0610.352
Rmeas0.0710.415
Rpim0.0360.216
Number of reflections319564630
<I/σ(I)>122.8
Completeness [%]99.899.7
Redundancy3.73.5
CC(1/2)0.9970.878
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP6.5291Precipitant: 25 % wt/vol PEG 2000,2 200mM MgCl2, 100 mM sodium cacodylate, pH 6.5 Sample: Hsp90a-NTD K112A 20 mg/mL, 10 mM AMPPNP, 500 mM NaCl, 20 mM TRIS, pH 7.5

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PDB entries from 2024-05-15

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