6GKX
Crystal structure of the R-type bacteriocin tube protein CD1364 from Clostridium difficile in the pre-assembled state
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | BESSY BEAMLINE 14.1 |
Synchrotron site | BESSY |
Beamline | 14.1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2014-07-31 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.918 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 36.323, 36.323, 216.813 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 35.824 - 1.500 |
R-factor | 0.1928 |
Rwork | 0.192 |
R-free | 0.22000 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2guj |
Data reduction software | XDS |
Data scaling software | Aimless (0.6.3) |
Phasing software | PHENIX |
Refinement software | PHENIX (dev_3112) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 43.360 | 43.360 | 1.530 |
High resolution limit [Å] | 1.500 | 8.220 | 1.500 |
Rmerge | 0.083 | 0.041 | 2.290 |
Rmeas | 0.085 | 0.042 | 2.335 |
Rpim | 0.017 | 0.010 | 0.455 |
Number of reflections | 24715 | 227 | 1194 |
<I/σ(I)> | 19.7 | ||
Completeness [%] | 100.0 | 99.8 | 100 |
Redundancy | 24.8 | 17.4 | 25.9 |
CC(1/2) | 1.000 | 1.000 | 0.704 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 20% PEG3350, 0.2 M ammoniumchloride |