6GDN
Holliday Junctions formed from Telomeric DNA
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-11-27 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 0.91587 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 49.937, 45.374, 63.828 |
Unit cell angles | 90.00, 101.01, 90.00 |
Refinement procedure
Resolution | 45.380 - 3.000 |
R-factor | 0.2366 |
Rwork | 0.234 |
R-free | 0.27900 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6DGH |
RMSD bond length | 0.008 |
RMSD bond angle | 1.691 |
Data reduction software | xia2 (0.5.474-gb1e580cd-dials-1.8) |
Data scaling software | Aimless (0.5.32) |
Phasing software | PHASER |
Refinement software | REFMAC (refmac_5.8.0222) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 45.380 | 45.380 | 2.750 |
High resolution limit [Å] | 2.680 | 11.990 | 2.680 |
Rmerge | 0.055 | 0.019 | 0.751 |
Rmeas | 0.064 | 0.022 | 0.877 |
Rpim | 0.033 | 0.011 | 0.447 |
Number of reflections | 8053 | 106 | 574 |
<I/σ(I)> | 10.7 | ||
Completeness [%] | 99.9 | 98.3 | 99.8 |
Redundancy | 3.6 | 3.5 | 3.6 |
CC(1/2) | 0.999 | 1.000 | 0.459 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6 | 297 | 0.04 M Magnesium acetate tetrahydrate, 0.05 M Sodium cacodylate trihydrate, 30% v/v (+/-)-2-Methyl-2,4-pentanediol. |