Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6GDN

Holliday Junctions formed from Telomeric DNA

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I04-1
Synchrotron siteDiamond
BeamlineI04-1
Temperature [K]100
Detector technologyPIXEL
Collection date2017-11-27
DetectorDECTRIS PILATUS3 S 6M
Wavelength(s)0.91587
Spacegroup nameP 1 21 1
Unit cell lengths49.937, 45.374, 63.828
Unit cell angles90.00, 101.01, 90.00
Refinement procedure
Resolution45.380 - 3.000
R-factor0.2366
Rwork0.234
R-free0.27900
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6DGH
RMSD bond length0.008
RMSD bond angle1.691
Data reduction softwarexia2 (0.5.474-gb1e580cd-dials-1.8)
Data scaling softwareAimless (0.5.32)
Phasing softwarePHASER
Refinement softwareREFMAC (refmac_5.8.0222)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]45.38045.3802.750
High resolution limit [Å]2.68011.9902.680
Rmerge0.0550.0190.751
Rmeas0.0640.0220.877
Rpim0.0330.0110.447
Number of reflections8053106574
<I/σ(I)>10.7
Completeness [%]99.998.399.8
Redundancy3.63.53.6
CC(1/2)0.9991.0000.459
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP62970.04 M Magnesium acetate tetrahydrate, 0.05 M Sodium cacodylate trihydrate, 30% v/v (+/-)-2-Methyl-2,4-pentanediol.

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon