6G7R
Structure of fully reduced variant E28Q of E. coli hydrogenase-1 at pH 8
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I24 |
Synchrotron site | Diamond |
Beamline | I24 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-05-13 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.9686 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 94.068, 97.814, 183.210 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 67.890 - 1.200 |
R-factor | 0.11189 |
Rwork | 0.111 |
R-free | 0.13303 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5lmm |
RMSD bond length | 0.010 |
RMSD bond angle | 1.561 |
Data reduction software | DIALS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0222) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 94.100 | 1.220 |
High resolution limit [Å] | 1.200 | 1.200 |
Rmerge | 0.073 | 0.830 |
Rpim | 0.037 | 0.460 |
Number of reflections | 504435 | 23707 |
<I/σ(I)> | 11.4 | 1.7 |
Completeness [%] | 96.6 | 92.4 |
Redundancy | 5.7 | 5 |
CC(1/2) | 0.998 | 0.463 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.1 | 296 | 100 mM tris pH 8.1, 150 mM NaCl, 200 mM LiSO4 19-21 % PEG 3350 |