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6G7R

Structure of fully reduced variant E28Q of E. coli hydrogenase-1 at pH 8

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I24
Synchrotron siteDiamond
BeamlineI24
Temperature [K]100
Detector technologyPIXEL
Collection date2017-05-13
DetectorDECTRIS PILATUS3 6M
Wavelength(s)0.9686
Spacegroup nameP 21 21 21
Unit cell lengths94.068, 97.814, 183.210
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution67.890 - 1.200
R-factor0.11189
Rwork0.111
R-free0.13303
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5lmm
RMSD bond length0.010
RMSD bond angle1.561
Data reduction softwareDIALS
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0222)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]94.1001.220
High resolution limit [Å]1.2001.200
Rmerge0.0730.830
Rpim0.0370.460
Number of reflections50443523707
<I/σ(I)>11.41.7
Completeness [%]96.692.4
Redundancy5.75
CC(1/2)0.9980.463
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP8.1296100 mM tris pH 8.1, 150 mM NaCl, 200 mM LiSO4 19-21 % PEG 3350

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PDB entries from 2024-05-15

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