6G50
The structure of thiocyanate dehydrogenase from Thioalkalivibrio paradoxus as isolated.
Replaces: 5F30Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID29 |
Synchrotron site | ESRF |
Beamline | ID29 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-02-17 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.98400 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 90.630, 162.280, 90.570 |
Unit cell angles | 90.00, 119.51, 90.00 |
Refinement procedure
Resolution | 45.310 - 1.650 |
R-factor | 0.14699 |
Rwork | 0.143 |
R-free | 0.20716 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 5F30 |
RMSD bond length | 0.016 |
RMSD bond angle | 1.901 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 45.400 | 1.700 |
High resolution limit [Å] | 1.650 | 1.650 |
Rmeas | 0.098 | 0.790 |
Number of reflections | 691361 | 22515 |
<I/σ(I)> | 9.2 | 1.65 |
Completeness [%] | 97.3 | 96.8 |
Redundancy | 2.6 | |
CC(1/2) | 0.996 | 0.510 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.5 | 290 | PRECIPITANT SOLUTION: 0.2 M lithium sulfate, 0.1 M BIS-TRIS, pH 5.5, 25% w/v PEG 3350. Protein solution: TcDH 10 mg/ml 25 mM borate, pH 9.5 |