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6FUD

Complex of rice blast (Magnaporthe oryzae) effector protein AVR-PikA with the HMA domain of Pikm-1 from rice (Oryza sativa)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I04
Synchrotron siteDiamond
BeamlineI04
Temperature [K]100
Detector technologyPIXEL
Collection date2015-11-28
DetectorDECTRIS PILATUS3 6M
Wavelength(s)0.9795
Spacegroup nameP 1 21 1
Unit cell lengths30.070, 54.440, 46.640
Unit cell angles90.00, 104.43, 90.00
Refinement procedure
Resolution34.760 - 1.300
R-factor0.12719
Rwork0.125
R-free0.16191
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5a6w
RMSD bond length0.017
RMSD bond angle1.775
Data reduction softwarexia2 (0.4.0.0)
Data scaling softwareAimless (0.5.17)
Phasing softwarePHASER (2.5.7)
Refinement softwareREFMAC (5.8.0158)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]34.7601.330
High resolution limit [Å]1.3001.300
Rmerge0.043
Number of reflections33854
<I/σ(I)>21.5
Completeness [%]99.3
Redundancy7.8
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7.52930.12M Alcohols (0.2M 1,6-Hexanediol; 0.2M 1-Butanol; 0.2M 1,2-Propanediol; 0.2M 2-Propanol; 0.2M 1,4-Butanediol; 0.2M 1,3-Propanediol); 0.1M Buffer system 2 (1M sodium HEPES, MOPS (acid)) pH 7.5; 50% v/v Precipitant mix 4 (25%v/v MPD; 25%v/v PEG 1000; 25%v/v PEG3350)

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PDB entries from 2024-05-15

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