6FNQ
Ergothioneine-biosynthetic methyltransferase EgtD in complex with N,N,N-trimethylhistidine (hercynine)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | BESSY BEAMLINE 14.1 |
Synchrotron site | BESSY |
Beamline | 14.1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2014-10-15 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9184 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 71.040, 79.377, 136.045 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.333 - 1.750 |
R-factor | 0.1534 |
Rwork | 0.152 |
R-free | 0.17870 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | PDBID 4PIM |
Data reduction software | XDS |
Data scaling software | Aimless (0.3.11) |
Phasing software | PHENIX |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 49.330 | 49.330 | 1.780 |
High resolution limit [Å] | 1.750 | 9.090 | 1.750 |
Rmerge | 0.140 | 0.030 | 1.624 |
Rmeas | 0.145 | 0.032 | 1.685 |
Rpim | 0.039 | 0.009 | 0.448 |
Total number of observations | 1046638 | 7539 | 58915 |
Number of reflections | 78334 | 649 | 4258 |
<I/σ(I)> | 15.3 | 58.2 | 1.9 |
Completeness [%] | 100.0 | 99.3 | 100 |
Redundancy | 13.4 | 11.6 | 13.8 |
CC(1/2) | 0.999 | 1.000 | 0.704 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 298 | 18% (w/v) PEG 8000, 20% (v/v) glycerol, 0.16 M Mg-Acetate, 0.08 M Na-Cacodylate |