6FL3
Inositol 1,3,4,5,6-pentakisphosphate 2-kinase from A. thaliana in complex with myo-IP5 and ADP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2011-10-17 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.9173 |
Spacegroup name | P 1 |
Unit cell lengths | 58.950, 59.010, 83.360 |
Unit cell angles | 88.98, 89.56, 63.65 |
Refinement procedure
Resolution | 52.872 - 2.360 |
R-factor | 0.1575 |
Rwork | 0.154 |
R-free | 0.21730 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2xam |
RMSD bond length | 0.007 |
RMSD bond angle | 1.057 |
Data scaling software | SCALA (3.3.16) |
Refinement software | PHENIX (1.10.1_2155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 52.872 | 52.872 | 2.420 |
High resolution limit [Å] | 2.360 | 10.550 | 2.360 |
Rmerge | 0.035 | 0.408 | |
Rmeas | 0.103 | 0.043 | 0.535 |
Rpim | 0.069 | 0.029 | 0.360 |
Number of reflections | 37982 | 457 | 2806 |
<I/σ(I)> | 8.2 | 18.2 | 1.9 |
Completeness [%] | 91.8 | 97.5 | 93.5 |
Redundancy | 2.1 | 2.2 | 2.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 289 | 18 % PEG 3350, 0.1 M bis-tris propane pH 6.5, 2 mM MgCl2, 25% EG or 35% PEG 3350, 0.1 M bis-tris propane pH 6.5, 2 mM MgCl2 |