6FL2
Crystal structure of a dye-decolorizing peroxidase D143A variant from Klebsiella pneumoniae (KpDyP)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE MASSIF-1 |
Synchrotron site | ESRF |
Beamline | MASSIF-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-06-17 |
Detector | DECTRIS PILATUS3 2M |
Wavelength(s) | 0.966 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 50.760, 76.690, 76.140 |
Unit cell angles | 90.00, 107.79, 90.00 |
Refinement procedure
Resolution | 52.684 - 1.270 |
R-factor | 0.115502274903 |
Rwork | 0.114 |
R-free | 0.14085 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6fks |
RMSD bond length | 0.010 |
RMSD bond angle | 1.075 |
Data reduction software | xia2 |
Data scaling software | xia2 |
Phasing software | PHASER |
Refinement software | PHENIX (1.11.1_2575) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 52.690 | 1.315 |
High resolution limit [Å] | 1.270 | 1.270 |
Rmerge | 0.030 | 0.424 |
Rmeas | 0.038 | 0.532 |
Rpim | 0.023 | 0.318 |
Number of reflections | 142004 | 14135 |
<I/σ(I)> | 16.61 | 2.63 |
Completeness [%] | 97.2 | 96.98 |
Redundancy | 1.4 | 2.5 |
CC(1/2) | 0.999 | 0.794 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 298.15 | 23% w/v PEG 3350, 0.1 M MgCl2, 0.1 M Tris-HCl, pH 8.5 |