6FJK
Inositol 1,3,4,5,6-pentakisphosphate 2-kinase from A. thaliana in complex with myo-IP6 and ADP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2011-09-21 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.9173 |
Spacegroup name | P 1 |
Unit cell lengths | 59.810, 60.340, 83.980 |
Unit cell angles | 88.53, 89.18, 63.36 |
Refinement procedure
Resolution | 83.952 - 2.025 |
R-factor | 0.1803 |
Rwork | 0.178 |
R-free | 0.22540 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2xam |
RMSD bond length | 0.007 |
RMSD bond angle | 0.961 |
Data reduction software | xia2 |
Data scaling software | xia2 |
Phasing software | PHENIX |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 83.952 | 83.952 | 2.080 |
High resolution limit [Å] | 2.025 | 9.060 | 2.025 |
Rmerge | 0.054 | 0.219 | |
Rmeas | 0.099 | 0.045 | 0.584 |
Rpim | 0.070 | 0.032 | 0.413 |
Number of reflections | 61224 | 745 | 4591 |
<I/σ(I)> | 6.9 | 12.4 | 3.5 |
Completeness [%] | 89.6 | 97.7 | 89.9 |
Redundancy | 1.9 | 2 | 2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 289 | 18 % PEG 3350, 0.1 M bis-tris propane pH 6.5, 2 mM MgCl2, 25% EG or 35% PEG 3350, 0.1 M bis-tris propane pH 6.5, 2 mM MgCl2 |