6FJA
Crystal structure of T2D three-domain heme-Cu nitrite reductase from Ralstonia pickettii
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04 |
Synchrotron site | Diamond |
Beamline | I04 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2012-02-17 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.98 |
Spacegroup name | H 3 |
Unit cell lengths | 128.230, 128.230, 86.110 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 46.660 - 2.200 |
R-factor | 0.13807 |
Rwork | 0.136 |
R-free | 0.17538 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3ziy |
RMSD bond length | 0.011 |
RMSD bond angle | 1.516 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0135) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 46.660 | 2.260 |
High resolution limit [Å] | 2.200 | 2.200 |
Rmerge | 0.102 | 0.535 |
Rpim | 0.067 | 0.430 |
Number of reflections | 26499 | 1798 |
<I/σ(I)> | 0.993 | 2.1 |
Completeness [%] | 98.9 | 90.9 |
Redundancy | 3.3 | 2.6 |
CC(1/2) | 0.559 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 7.5 | 298 | Bis-Tris propane, 01M citrate, 22% P3350 MME |