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6FFJ

Anti-tumor antibody 14F7-derived single chain fragment variable (scFv)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE ID29
Synchrotron siteESRF
BeamlineID29
Temperature [K]100
Detector technologyPIXEL
Collection date2017-02-05
DetectorDECTRIS PILATUS3 S 6M
Wavelength(s)1.0332
Spacegroup nameP 1 21 1
Unit cell lengths63.798, 119.066, 68.286
Unit cell angles90.00, 90.22, 90.00
Refinement procedure
Resolution46.708 - 2.200
R-factor0.1865
Rwork0.184
R-free0.23840
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3umt
RMSD bond length0.010
RMSD bond angle1.065
Data reduction softwareXDS
Phasing softwarePHENIX
Refinement softwarePHENIX ((1.13_2998: ???))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]46.7102.280
High resolution limit [Å]2.2002.200
Rmerge0.1120.532
Rmeas0.1370.653
Rpim0.0780.374
Number of reflections490264880
<I/σ(I)>3.41.2
Completeness [%]94.896.4
Redundancy2.52.5
CC(1/2)0.9890.800
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP29312.5 % w/v PEG 1000, 12.5 % w/v PEG 3350, 12.5 % v/v MPD, 0.02 M 1,6-hexandiol, 0.02 M 1-butanol, 0.02 M (RS)-1,2-propanediol, 0.02 M 2-propanol, 0.02 M 1,4-butanediol, 0.02 M 1,3-propanediol, 0.1 M bicine/tris base pH 8.5

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PDB entries from 2025-12-03

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