6FCN
Crystal structure of human PCNA soaked with p47phox(106-127) peptide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE MASSIF-1 |
Synchrotron site | ESRF |
Beamline | MASSIF-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-10-29 |
Detector | DECTRIS PILATUS3 2M |
Wavelength(s) | 0.96600 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 39.880, 140.670, 171.770 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 41.000 - 3.220 |
R-factor | 0.21206 |
Rwork | 0.209 |
R-free | 0.27178 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1axc |
RMSD bond length | 0.007 |
RMSD bond angle | 1.233 |
Data reduction software | XDS (VERSION May 1, 2016 BUILT=20160617) |
Data scaling software | XSCALE (VERSION May 1, 2016 BUILT=20160617) |
Phasing software | PHASER (2.6.1) |
Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 41.000 | 3.300 |
High resolution limit [Å] | 3.220 | 3.220 |
Rmerge | 0.096 | 1.710 |
Rmeas | 0.106 | 1.880 |
Number of reflections | 16369 | 1175 |
<I/σ(I)> | 14.3 | |
Completeness [%] | 99.4 | 97.8 |
Redundancy | 5.71 | 5.61 |
CC(1/2) | 0.999 | 0.590 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 293 | 19 to 23% PEG 3350, 0.2 to 0.3 M NaCl, 0.1 M Tris-HCl pH 8.5 12h prior to crystal freezing, 100 uM of p47phox(106-127) peptide was added to the crystallization drop |