6EYT
Crystal structure of the Salmonella effector SseK3 in complex with UDP-GlcNAc and Manganese
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04 |
Synchrotron site | Diamond |
Beamline | I04 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-06-26 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.97950 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 73.970, 85.940, 96.030 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.010 - 2.210 |
R-factor | 0.1985 |
Rwork | 0.196 |
R-free | 0.24080 |
RMSD bond length | 0.005 |
RMSD bond angle | 0.777 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | MOLREP |
Refinement software | PHENIX ((1.12_2829)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.010 | |
High resolution limit [Å] | 2.210 | |
Rmerge | 0.181 | 1.034 |
Rmeas | 0.197 | 1.185 |
Rpim | 0.079 | 0.564 |
Number of reflections | 30891 | |
<I/σ(I)> | 6.99 | 1.18 |
Completeness [%] | 98.5 | 91.72 |
Redundancy | 6 | 3.8 |
CC(1/2) | 0.550 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291 | 0.1 M TRIS pH 8.5, 0.2 M NaCl, 25% PEG3350 |