6EOM
Structure of DPP III from Caldithrix abyssi
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ELETTRA BEAMLINE 5.2R |
Synchrotron site | ELETTRA |
Beamline | 5.2R |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2014-11-03 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 1.27050 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 51.472, 90.549, 132.973 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.000 - 2.103 |
R-factor | 0.2113 |
Rwork | 0.210 |
R-free | 0.23980 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | Se-Met labeled protein solved using MAD metode |
RMSD bond length | 0.003 |
RMSD bond angle | 0.448 |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.17) |
Phasing software | MOLREP |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 48.000 | 47.990 | 2.160 |
High resolution limit [Å] | 2.100 | 8.920 | 2.100 |
Rmerge | 0.117 | 0.037 | 0.819 |
Rmeas | 0.124 | 0.040 | 0.873 |
Rpim | 0.042 | 0.014 | 0.298 |
Number of reflections | 36965 | 568 | 2954 |
<I/σ(I)> | 13.4 | ||
Completeness [%] | 99.8 | 99.6 | 98.4 |
Redundancy | 8.7 | 8.2 | 8.3 |
CC(1/2) | 0.998 | 0.999 | 0.903 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 291 | 0.1 M Bis-Tris pH 6.5, 25% PEG 3,350 |