6EKB
Crystal structure of the BSD2 homolog of Arabidopsis thaliana
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X10SA |
Synchrotron site | SLS |
Beamline | X10SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-02-19 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.2826 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 55.708, 55.708, 48.131 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 30.000 - 1.900 |
R-factor | 0.1901 |
Rwork | 0.189 |
R-free | 0.21580 |
Structure solution method | MAD |
RMSD bond length | 0.017 |
RMSD bond angle | 1.814 |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.28) |
Phasing software | SHELXDE |
Refinement software | REFMAC (5.8.0155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 47.850 | 47.850 | 1.950 |
High resolution limit [Å] | 1.910 | 8.950 | 1.910 |
Rmerge | 0.138 | 0.046 | 4.852 |
Rmeas | 0.140 | 0.046 | 4.904 |
Rpim | 0.020 | 0.007 | 0.699 |
Number of reflections | 6226 | 88 | 379 |
<I/σ(I)> | 24.7 | ||
Completeness [%] | 99.7 | 99.8 | 95 |
Redundancy | 48.6 | 37.6 | 47.4 |
CC(1/2) | 1.000 | 1.000 | 0.742 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 291 | 20 % PEG 10,000, 8 % ethylene glycol and 0.1 M HEPES-NaOH pH 7.5 |