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6EJB

Human Xylosyltransferase 1 in complex with peptide QEEEGSAGGQGG

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I04-1
Synchrotron siteDiamond
BeamlineI04-1
Temperature [K]100
Detector technologyPIXEL
Collection date2017-03-11
DetectorDECTRIS PILATUS 6M-F
Wavelength(s)0.9282
Spacegroup nameP 21 21 21
Unit cell lengths67.475, 86.694, 152.642
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution76.321 - 2.557
R-factor0.2412
Rwork0.239
R-free0.27950
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2gam
RMSD bond length0.002
RMSD bond angle0.475
Data scaling softwareAimless (0.5.31)
Phasing softwarePHASER
Refinement softwarePHENIX
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]76.42076.4202.630
High resolution limit [Å]2.55711.4502.560
Rmerge0.2030.0811.278
Rmeas0.2330.0911.486
Rpim0.1120.0410.742
Number of reflections296224072167
<I/σ(I)>4.6
Completeness [%]100.099.9100
Redundancy4.344.1
CC(1/2)0.9710.9920.473
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.529355-65% Morpheus Precipitant mix 2 (PEG8000 and Ethylene glycol) 0.1M Bicine/Tris buffer at pH 7.5 0.1M of NPS mix (0.033M of each)

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PDB entries from 2024-05-15

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