6EHJ
Human N-myristoyltransferase (NMT1) with Myristoyl-CoA and peptide bound
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-05-18 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 0.97625 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 80.250, 177.540, 58.140 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.080 - 2.100 |
R-factor | 0.187 |
Rwork | 0.184 |
R-free | 0.23860 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4c2y |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 47.082 | 2.150 |
High resolution limit [Å] | 2.100 | 2.100 |
Rmerge | 0.112 | 0.968 |
Rpim | 0.047 | 0.047 |
Number of reflections | 49357 | 3595 |
<I/σ(I)> | 12.3 | 1.3 |
Completeness [%] | 99.8 | 99.3 |
Redundancy | 6.7 | 4.1 |
CC(1/2) | 0.998 | 0.508 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 16-18% (v/w) PEG 4K, 5 mM NiCl2, 100 mM sodium citrate pH 4.5, and 2.5% (v/v) glycerol |