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6ECF

Vlm2 thioesterase domain with genetically encoded 2,3-diaminopropionic acid bound with a dodecadepsipeptide, space group P1

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsCLSI BEAMLINE 08ID-1
Synchrotron siteCLSI
Beamline08ID-1
Temperature [K]100
Detector technologyPIXEL
Collection date2017-12-03
DetectorDECTRIS PILATUS3 S 6M
Wavelength(s).9794
Spacegroup nameP 1
Unit cell lengths76.996, 77.129, 90.329
Unit cell angles91.77, 114.89, 117.94
Refinement procedure
Resolution78.550 - 2.500
R-factor0.1995
Rwork0.197
R-free0.24890
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6ecb
RMSD bond length0.002
RMSD bond angle0.558
Data reduction softwareDIALS
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwarePHENIX (1.13_2998)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]78.5502.580
High resolution limit [Å]2.5002.500
Rmerge0.071
Rmeas0.100
Rpim0.071
Number of reflections539455422
<I/σ(I)>4.1
Completeness [%]97.6
Redundancy1.7
CC(1/2)0.9850.706
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP82951.4 M DL-malic acid, 25 mM HEPES, pH 8.0, 100 mM sodium chloride, 0.2 mM TCEP

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