6EBD
OhrB (Organic Hydroperoxide Resistance protein) mutant (C60A) from Chromobacterium violaceum, interacting with dihydrolipoamide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL12-2 |
Synchrotron site | SSRL |
Beamline | BL12-2 |
Temperature [K] | 80 |
Detector technology | PIXEL |
Collection date | 2016-04-19 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97946 |
Spacegroup name | P 61 |
Unit cell lengths | 87.675, 87.675, 179.609 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 35.000 - 2.610 |
R-factor | 0.19633 |
Rwork | 0.194 |
R-free | 0.23214 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6eb4 |
RMSD bond length | 0.012 |
RMSD bond angle | 1.830 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 43.840 | 2.730 |
High resolution limit [Å] | 2.610 | 2.610 |
Rmeas | 0.343 | |
Rpim | 0.105 | 1.526 |
Number of reflections | 23763 | 60434 |
<I/σ(I)> | 10.82 | |
Completeness [%] | 99.9 | |
Redundancy | 20.8 | |
CC(1/2) | 1.000 | 0.410 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.5 | 291.15 | Purified Ohr_C60A protein 10mg/ml in 5mM Tris-Hcl pH 7.4 Crystallisation conditions: Magnesium Clhoride 200mM, BIS-TRIS 100mM pH 5.5, PEG 3,350 25%w/v crystal was soaked for 10min in Lipoamide 5mM, solved in 5% ethanol and Crystallisation condition |