6E8S
Structure of the iMango-III aptamer bound to TO1-Biotin
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-05-07 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1.495 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 63.031, 67.585, 76.667 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 38.333 - 2.350 |
R-factor | 0.1849 |
Rwork | 0.182 |
R-free | 0.20750 |
RMSD bond length | 0.006 |
RMSD bond angle | 1.262 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | SHELXD |
Refinement software | PHENIX ((1.14_3260: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 46.100 | 2.430 |
High resolution limit [Å] | 2.350 | 2.350 |
Number of reflections | 14124 | 1239 |
<I/σ(I)> | 50.6 | |
Completeness [%] | 99.9 | 100 |
Redundancy | 7.2 | 7.1 |
CC(1/2) | 0.600 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 294 | 0.04 M NaCacadylate pH6.5, 0.08 M NaCl, 0.012 M KCl, 0.02 M MgCl2, 0.012M Spermine, 5.5% Sucrose, 31% MPD |