6E7O
Crystal structure of deglycosylated human EPDR1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | CLSI BEAMLINE 08ID-1 |
Synchrotron site | CLSI |
Beamline | 08ID-1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-12-01 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.9793 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 87.805, 97.482, 189.469 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 61.687 - 3.000 |
R-factor | 0.2557 |
Rwork | 0.255 |
R-free | 0.27810 |
Structure solution method | SAD |
RMSD bond length | 0.005 |
RMSD bond angle | 0.884 |
Data reduction software | HKL-2000 |
Data scaling software | Aimless |
Phasing software | PHENIX |
Refinement software | PHENIX ((1.14_3211)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 61.700 | 3.100 |
High resolution limit [Å] | 3.000 | 3.000 |
Number of reflections | 17638 | |
<I/σ(I)> | 15.7 | 1.9 |
Completeness [%] | 99.9 | |
Redundancy | 8.3 | 8.4 |
CC(1/2) | 0.998 | 0.714 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.2 M lithium sulfate, 0.1 M sodium acetate pH 4.5, 30% PEG8000, 4% propanediol |