6DYX
Structure of VHH R419 isolated from a pre-immune phage display library
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | CLSI BEAMLINE 08ID-1 |
Synchrotron site | CLSI |
Beamline | 08ID-1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-06-07 |
Detector | RAYONIX MX-300 |
Wavelength(s) | 0.97949 |
Spacegroup name | P 65 2 2 |
Unit cell lengths | 58.281, 58.281, 155.358 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 36.145 - 1.500 |
R-factor | 0.1767 |
Rwork | 0.176 |
R-free | 0.19030 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6dba |
RMSD bond length | 0.007 |
RMSD bond angle | 0.875 |
Data reduction software | xia2 |
Data scaling software | SCALA (3.3.20) |
Phasing software | PHASER |
Refinement software | PHENIX ((1.13_2998: ???)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 36.145 | 36.145 | 1.540 |
High resolution limit [Å] | 1.500 | 6.710 | 1.500 |
Rmerge | 0.223 | 0.335 | |
Rmeas | 0.218 | 0.240 | 0.359 |
Rpim | 0.067 | 0.084 | 0.126 |
Number of reflections | 25716 | 349 | 1696 |
<I/σ(I)> | 10.7 | 2.5 | 2 |
Completeness [%] | 99.2 | 95.7 | 91.5 |
Redundancy | 10.1 | 8.1 | 7.1 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 298 | 0.2 M ammonium sulfate 0.1 M MES 30% PEG MME |