6DRB
Crystal Structure of the YopH PTP1B WPD loop Chimera 3 PTPase bound to tungstate
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL14-1 |
Synchrotron site | SSRL |
Beamline | BL14-1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-07-01 |
Detector | MARMOSAIC 325 mm CCD |
Wavelength(s) | 0.979 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 49.743, 54.920, 97.848 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 36.868 - 2.745 |
R-factor | 0.2153 |
Rwork | 0.213 |
R-free | 0.26350 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | pdbid 4YAA |
RMSD bond length | 0.002 |
RMSD bond angle | 0.474 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.11.1_2575) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.850 |
High resolution limit [Å] | 2.745 | 5.920 | 2.750 |
Rmerge | 0.155 | 0.071 | 1.499 |
Rmeas | 0.164 | 0.075 | 1.587 |
Rpim | 0.053 | 0.026 | 0.515 |
Number of reflections | 7417 | 827 | 698 |
<I/σ(I)> | 5.6 | 1.5 | |
Completeness [%] | 99.9 | 99.4 | 100 |
Redundancy | 9.5 | 8.4 | 9.3 |
CC(1/2) | 0.994 | 0.602 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | EVAPORATION | 7.5 | 298 | 0.1M Hepes pH7.5, 24% PEG 3350 |