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6DR9

Crystal Structure of the YopH PTP1B Chimera 3 PTPase apo form

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRL BEAMLINE BL7-1
Synchrotron siteSSRL
BeamlineBL7-1
Temperature [K]100
Detector technologyCCD
Collection date2016-04-15
DetectorADSC QUANTUM 315r
Wavelength(s)1.127
Spacegroup nameP 21 21 21
Unit cell lengths49.808, 53.772, 103.196
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution29.820 - 1.945
R-factor0.1779
Rwork0.176
R-free0.21730
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)pdbid 4YAA
RMSD bond length0.003
RMSD bond angle0.616
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHENIX
Refinement softwarePHENIX (1.11.1_2575)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0002.020
High resolution limit [Å]1.9454.2001.950
Rmerge0.1770.0501.732
Rmeas0.1840.0521.801
Rpim0.0500.0140.487
Number of reflections2010022511895
<I/σ(I)>4.81.4
Completeness [%]95.699.292.1
Redundancy12.613.412.5
CC(1/2)0.9990.606
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1EVAPORATION7.5298Hepes, PEG 3350

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