6DR9
Crystal Structure of the YopH PTP1B Chimera 3 PTPase apo form
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL7-1 |
Synchrotron site | SSRL |
Beamline | BL7-1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-04-15 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 1.127 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 49.808, 53.772, 103.196 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 29.820 - 1.945 |
R-factor | 0.1779 |
Rwork | 0.176 |
R-free | 0.21730 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | pdbid 4YAA |
RMSD bond length | 0.003 |
RMSD bond angle | 0.616 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.11.1_2575) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.020 |
High resolution limit [Å] | 1.945 | 4.200 | 1.950 |
Rmerge | 0.177 | 0.050 | 1.732 |
Rmeas | 0.184 | 0.052 | 1.801 |
Rpim | 0.050 | 0.014 | 0.487 |
Number of reflections | 20100 | 2251 | 1895 |
<I/σ(I)> | 4.8 | 1.4 | |
Completeness [%] | 95.6 | 99.2 | 92.1 |
Redundancy | 12.6 | 13.4 | 12.5 |
CC(1/2) | 0.999 | 0.606 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | EVAPORATION | 7.5 | 298 | Hepes, PEG 3350 |