6DPZ
X-ray crystal structure of AmpC beta-lactamase with inhibitor
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 8.3.1 |
Synchrotron site | ALS |
Beamline | 8.3.1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-10-11 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 1.11583 |
Spacegroup name | I 1 2 1 |
Unit cell lengths | 97.702, 77.737, 115.686 |
Unit cell angles | 90.00, 113.25, 90.00 |
Refinement procedure
Resolution | 62.746 - 1.500 |
R-factor | 0.193 |
Rwork | 0.191 |
R-free | 0.22330 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1ke4 |
RMSD bond length | 0.007 |
RMSD bond angle | 0.931 |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.32) |
Phasing software | MOLREP |
Refinement software | PHENIX (1.11.1_2575) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 62.750 | 1.530 |
High resolution limit [Å] | 1.500 | 1.500 |
Rmerge | 0.056 | 1.718 |
Rmeas | 0.061 | 1.869 |
Rpim | 0.024 | 0.727 |
Number of reflections | 126380 | 6182 |
<I/σ(I)> | 13.6 | |
Completeness [%] | 99.5 | 98.6 |
Redundancy | 6.6 | 6.4 |
CC(1/2) | 0.999 | 0.529 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 294 | 1.7M potassium phosphate |