6DNV
Crystal Structure of Neisseria meningitidis DsbD n-terminal domain in the reduced form
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX2 |
Synchrotron site | Australian Synchrotron |
Beamline | MX2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-03-16 |
Detector | ADSC QUANTUM 210r |
Wavelength(s) | 0.9537 |
Spacegroup name | P 3 2 1 |
Unit cell lengths | 116.980, 116.980, 45.790 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 41.726 - 1.603 |
R-factor | 0.1732 |
Rwork | 0.172 |
R-free | 0.19720 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.006 |
RMSD bond angle | 1.059 |
Data reduction software | MOSFLM |
Data scaling software | SCALA (3.3.22) |
Phasing software | PHASER |
Refinement software | PHENIX (dev_1951) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 101.308 | 41.726 | 1.690 |
High resolution limit [Å] | 1.603 | 5.070 | 1.603 |
Rmerge | 0.046 | 1.832 | |
Rmeas | 0.150 | 0.048 | 1.927 |
Rpim | 0.046 | 0.015 | 0.594 |
Number of reflections | 47439 | 1591 | 6907 |
<I/σ(I)> | 11.4 | 13.2 | 0.4 |
Completeness [%] | 100.0 | 99.9 | 100 |
Redundancy | 10.6 | 10.7 | 10.5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 293 | 2.5 M ammonium sulfate, 0.1 M Tris pH 9.1 |