6DLQ
PRPP Riboswitch bound to PRPP, manganese chloride soaked structure
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS-II BEAMLINE 17-ID-2 |
Synchrotron site | NSLS-II |
Beamline | 17-ID-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-09-21 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9792 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 85.321, 90.506, 73.482 |
Unit cell angles | 90.00, 122.52, 90.00 |
Refinement procedure
Resolution | 20.000 - 2.800 |
R-factor | 0.2287 |
Rwork | 0.226 |
R-free | 0.25420 |
RMSD bond length | 0.002 |
RMSD bond angle | 0.580 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | REFMAC ((1.12_2829: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 20.000 | 20.000 |
High resolution limit [Å] | 2.800 | 2.800 |
Rmerge | 0.082 | 0.518 |
Rpim | 0.040 | 0.327 |
Number of reflections | 21504 | |
<I/σ(I)> | 28.1 | |
Completeness [%] | 98.4 | |
Redundancy | 5.1 | |
CC(1/2) | 0.987 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291.15 | 0.2 M NH4-acetate, 0.1 M HEPES-KOH pH 7.4, and 45% 2-methyl-2,4-pentanediol (v/v) |