Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6DKM

DHD131

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 8.2.2
Synchrotron siteALS
Beamline8.2.2
Temperature [K]100
Detector technologyCCD
Collection date2018-05-02
DetectorADSC QUANTUM 315r
Wavelength(s)0.977017
Spacegroup nameP 1 21 1
Unit cell lengths39.199, 74.709, 105.257
Unit cell angles90.00, 92.75, 90.00
Refinement procedure
Resolution42.990 - 2.380
R-factor0.2443
Rwork0.241
R-free0.28320
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)Computational design model
RMSD bond length0.002
RMSD bond angle0.446
Data reduction softwareXDS (June 17, 2015)
Data scaling softwareXDS (June 17, 2015)
Phasing softwarePHASER (2.8.0.)
Refinement softwarePHENIX ((dev_3112: ???))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]42.9902.470
High resolution limit [Å]2.3802.380
Rmerge0.1801.560
Rmeas0.2071.794
Rpim0.1020.878
Number of reflections244652584
<I/σ(I)>6.61
Completeness [%]99.999.9
Redundancy4.14.2
CC(1/2)0.9970.344
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.5290.150.2M Ammonium acetate, 0.1M HEPES pH 7.5, 25% (w/v) Polyethylene glycol 3,350

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon