6DI6
Crystal structure of eukaryotic DNA primase large subunit iron-sulfur cluster domain
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-D |
Synchrotron site | APS |
Beamline | 21-ID-D |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-12-10 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 1.0782 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 41.085, 50.769, 89.832 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 31.940 - 1.390 |
R-factor | 0.126 |
Rwork | 0.124 |
R-free | 0.14600 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6dtz |
Data reduction software | DENZO |
Data scaling software | HKL-2000 |
Phasing software | PHASER (2.7.17) |
Refinement software | PHENIX |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 35.000 | 1.430 |
High resolution limit [Å] | 1.380 | 1.380 |
Rmerge | 0.096 | 0.312 |
Rmeas | 0.106 | 0.075 |
Rpim | 0.044 | 0.031 |
Total number of observations | 206412 | |
Number of reflections | 37530 | 4040 |
<I/σ(I)> | 9.3 | |
Completeness [%] | 95.3 | 76.5 |
Redundancy | 5.5 | 4.7 |
CC(1/2) | 0.962 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 289 | MPD, TRIS-HCl |