6DHC
X-ray structure of BACE1 in complex with a bicyclic isoxazoline carboxamide as the P3 ligand
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 31-ID |
Synchrotron site | APS |
Beamline | 31-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2018-04-05 |
Detector | MARMOSAIC 225 mm CCD |
Wavelength(s) | 0.9793 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 81.987, 103.322, 100.959 |
Unit cell angles | 90.00, 102.98, 90.00 |
Refinement procedure
Resolution | 40.301 - 2.850 |
R-factor | 0.1741 |
Rwork | 0.172 |
R-free | 0.21830 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.006 |
RMSD bond angle | 0.867 |
Data reduction software | MOSFLM |
Data scaling software | SCALA |
Phasing software | PHENIX |
Refinement software | PHENIX ((1.10_2155)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 98.380 | 2.900 |
High resolution limit [Å] | 2.850 | 2.850 |
Rmerge | 0.076 | 0.568 |
Rmeas | 0.082 | 0.661 |
Rpim | 0.042 | 0.336 |
Number of reflections | 38398 | 3843 |
<I/σ(I)> | 15.9 | 2.3 |
Completeness [%] | 99.8 | 99.9 |
Redundancy | 3.8 | 3.8 |
CC(1/2) | 0.998 | 0.784 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.5 | 298 | 0.2 M MgSO4, 0.1 M Na citrate (pH varied from 5.0 to 6.0) and 16 % to 22 % PEG4000 |