6DFJ
Crystal structure of anti-Zika antibody Z021 bound to DENV-1 envelope protein DIII
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL12-2 |
Synchrotron site | SSRL |
Beamline | BL12-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-07-20 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1.0 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 60.540, 91.600, 187.140 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 50.510 - 2.070 |
R-factor | 0.1862 |
Rwork | 0.184 |
R-free | 0.23150 |
RMSD bond length | 0.005 |
RMSD bond angle | 0.752 |
Data reduction software | MOSFLM |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 93.570 | 2.130 |
High resolution limit [Å] | 2.070 | 2.070 |
Rmerge | 0.046 | 0.702 |
Rpim | 0.022 | 0.339 |
Number of reflections | 31907 | 14638 |
<I/σ(I)> | 15 | 2.3 |
Completeness [%] | 99.7 | 99.9 |
Redundancy | 5.8 | 5.9 |
CC(1/2) | 0.997 | 0.724 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 298 | 0.1M sodium citrate pH 4.8, 28% Jeffamine ED-2001 pH 7.0 |