6DF5
Kaiso (ZBTB33) zinc finger DNA binding domain in complex with the specific Kaiso binding sequence (KBS)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL12-2 |
Synchrotron site | SSRL |
Beamline | BL12-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2013-06-01 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 1.0000 |
Spacegroup name | C 2 2 2 |
Unit cell lengths | 44.430, 184.580, 104.570 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 45.492 - 1.819 |
R-factor | 0.2136 |
Rwork | 0.211 |
R-free | 0.24060 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4f6m |
RMSD bond length | 0.011 |
RMSD bond angle | 1.120 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX (1.9_1692) |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 45.492 | 1.880 |
High resolution limit [Å] | 1.819 | 1.819 |
Rmerge | 0.130 | |
Rmeas | 0.142 | |
Number of reflections | 38971 | 3741 |
<I/σ(I)> | 7.07 | 1.2 |
Completeness [%] | 99.3 | 96.2 |
Redundancy | 6.1 | 5.6 |
CC(1/2) | 0.997 | 0.607 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.2 | 295 | 0.2 M Disodium Tartrate, 20 % PEG 3350 |