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6DDB

Crystal structure of the double mutant (D52N/R367Q) of NT5C2-537X in the basal state, Northeast Structural Genomics Consortium Target

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsNSLS BEAMLINE X4C
Synchrotron siteNSLS
BeamlineX4C
Temperature [K]100
Detector technologyCCD
Collection date2014-05-27
DetectorMARRESEARCH
Wavelength(s)0.979
Spacegroup nameC 1 2 1
Unit cell lengths143.126, 123.123, 90.314
Unit cell angles90.00, 115.50, 90.00
Refinement procedure
Resolution49.125 - 2.800
R-factor0.2251
Rwork0.217
R-free0.29140
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2xcw
RMSD bond length0.008
RMSD bond angle1.002
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwareCOMO
Refinement softwarePHENIX ((1.12_2829))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]49.1252.910
High resolution limit [Å]2.8002.800
Rmerge0.0900.390
Rmeas0.0900.420
Rpim0.0400.170
Number of reflections384333812
<I/σ(I)>24.45.7
Completeness [%]98.998.2
Redundancy6.16.1
CC(1/2)0.9800.930
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1MICROBATCH4.6293100 mM sodium acetate trihydrate, 30% (v/v) 2-Methyl-2, 4-pentanediol, 20 mM calcium chloride dihydrate, and 5 mM MnCl2

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