6DDB
Crystal structure of the double mutant (D52N/R367Q) of NT5C2-537X in the basal state, Northeast Structural Genomics Consortium Target
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS BEAMLINE X4C |
Synchrotron site | NSLS |
Beamline | X4C |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-05-27 |
Detector | MARRESEARCH |
Wavelength(s) | 0.979 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 143.126, 123.123, 90.314 |
Unit cell angles | 90.00, 115.50, 90.00 |
Refinement procedure
Resolution | 49.125 - 2.800 |
R-factor | 0.2251 |
Rwork | 0.217 |
R-free | 0.29140 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2xcw |
RMSD bond length | 0.008 |
RMSD bond angle | 1.002 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | COMO |
Refinement software | PHENIX ((1.12_2829)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 49.125 | 2.910 |
High resolution limit [Å] | 2.800 | 2.800 |
Rmerge | 0.090 | 0.390 |
Rmeas | 0.090 | 0.420 |
Rpim | 0.040 | 0.170 |
Number of reflections | 38433 | 3812 |
<I/σ(I)> | 24.4 | 5.7 |
Completeness [%] | 98.9 | 98.2 |
Redundancy | 6.1 | 6.1 |
CC(1/2) | 0.980 | 0.930 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | MICROBATCH | 4.6 | 293 | 100 mM sodium acetate trihydrate, 30% (v/v) 2-Methyl-2, 4-pentanediol, 20 mM calcium chloride dihydrate, and 5 mM MnCl2 |