6DAX
X-ray crystal structure of VioC bound to Fe(II), L-homoarginine, and 2-oxoglutarate
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-G |
Synchrotron site | APS |
Beamline | 21-ID-G |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-02-15 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 0.979 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 80.376, 67.076, 62.646 |
Unit cell angles | 90.00, 108.72, 90.00 |
Refinement procedure
Resolution | 50.000 - 1.700 |
R-factor | 0.2161 |
Rwork | 0.216 |
R-free | 0.22380 |
RMSD bond length | 0.005 |
RMSD bond angle | 0.991 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0049) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.730 |
High resolution limit [Å] | 1.700 | 4.610 | 1.700 |
Rmerge | 0.054 | 0.048 | 0.432 |
Rmeas | 0.063 | 0.057 | 0.512 |
Rpim | 0.033 | 0.030 | 0.272 |
Number of reflections | 33837 | 1773 | 1490 |
<I/σ(I)> | 11.3 | ||
Completeness [%] | 97.2 | 98.1 | 86.7 |
Redundancy | 3.6 | 3.6 | 3.3 |
CC(1/2) | 0.967 | 0.890 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | EVAPORATION | 8.5 | 293 | 2-oxoglutarate, Tris-HCl |