6D2W
Crystal structure of Prevotella bryantii endo-beta-mannanase/endo-beta-glucanase PbGH26A-GH5A
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-ID |
Synchrotron site | APS |
Beamline | 19-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-12-16 |
Detector | DECTRIS PILATUS3 X 6M |
Wavelength(s) | 0.97914 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 54.484, 96.753, 138.089 |
Unit cell angles | 90.00, 99.27, 90.00 |
Refinement procedure
Resolution | 19.812 - 2.100 |
R-factor | 0.147 |
Rwork | 0.146 |
R-free | 0.19330 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3wdq 3vdh |
RMSD bond length | 0.004 |
RMSD bond angle | 0.680 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | PHENIX |
Refinement software | PHENIX ((dev_3026: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 40.000 | 2.140 |
High resolution limit [Å] | 2.100 | 2.100 |
Rmerge | 0.110 | 0.675 |
Rpim | 0.069 | 0.444 |
Number of reflections | 80833 | 3908 |
<I/σ(I)> | 9.89 | 1.92 |
Completeness [%] | 98.2 | 95.6 |
Redundancy | 3.2 | 2.9 |
CC(1/2) | 0.583 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 298 | 0.1 M Tris pH 8.5, 1.6 M ammonium sulfate, 12% glycerol, 20 mg/mL protein. |