6D2V
Apo Structure of TerB, an NADP Dependent Oxidoreductase in the Terfestatin Biosynthesis Pathway
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-F |
Synchrotron site | APS |
Beamline | 21-ID-F |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-12-07 |
Detector | RAYONIX MX-300 |
Wavelength(s) | 0.9787 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 58.516, 80.598, 139.518 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 38.716 - 1.901 |
R-factor | 0.1632 |
Rwork | 0.161 |
R-free | 0.19780 |
Structure solution method | FOURIER SYNTHESIS |
RMSD bond length | 0.005 |
RMSD bond angle | 0.853 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHENIX |
Refinement software | PHENIX ((phenix.refine: 1.12_2829)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 47.346 | 47.346 | 2.020 |
High resolution limit [Å] | 1.900 | 5.670 | 1.900 |
Rmerge | 0.083 | 0.025 | 0.716 |
Rmeas | 0.089 | 0.027 | 0.769 |
Total number of observations | 387913 | ||
Number of reflections | 52609 | 2146 | 8373 |
<I/σ(I)> | 18.51 | 56.63 | 3.14 |
Completeness [%] | 99.7 | 98.7 | 99.3 |
Redundancy | 7.374 | 6.774 | 7.348 |
CC(1/2) | 0.999 | 1.000 | 0.919 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 298 | 0.1 M Potassium thiocyanate, 30% w/v PEG Monomethyl ether 2000, 50 mM NaCl, 10 mM HEPES buffer pH 7.0 |