6D1H
Crystal structure of NDM-1 complexed with compound 11
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-BM |
Synchrotron site | APS |
Beamline | 22-BM |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-11-25 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 1.00 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 42.030, 59.990, 41.670 |
Unit cell angles | 90.00, 97.88, 90.00 |
Refinement procedure
Resolution | 27.927 - 1.250 |
R-factor | 0.1475 |
Rwork | 0.146 |
R-free | 0.18040 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4tzf |
Data reduction software | iMOSFLM (7.2.1) |
Data scaling software | SCALA (3.3.22) |
Phasing software | PHASER (2.8.1) |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 30.000 | 29.990 | 1.320 |
High resolution limit [Å] | 1.250 | 3.950 | 1.250 |
Rmerge | 0.085 | 0.041 | 0.660 |
Rmeas | 0.099 | 0.057 | 0.048 |
Rpim | 0.051 | 0.029 | 0.025 |
Number of reflections | 56693 | 1851 | 8261 |
<I/σ(I)> | 7.7 | ||
Completeness [%] | 100.0 | 99.7 | 100 |
Redundancy | 3.6 | 3.7 | 3.5 |
CC(1/2) | 0.996 | 0.996 | 0.536 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293.15 | 50 mM Potassium phosphate monobasic, 10 mM Calcium chloride, 25% (w/v) PEG8000 |