6CU5
Crystal structure of a protein arginine N-methyltransferase from Naegleria fowleri bound to SAH
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-F |
Synchrotron site | APS |
Beamline | 21-ID-F |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2018-03-01 |
Detector | RAYONIX MX-300 |
Wavelength(s) | 0.97872 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 43.200, 101.450, 80.680 |
Unit cell angles | 90.00, 100.10, 90.00 |
Refinement procedure
Resolution | 42.751 - 2.700 |
R-factor | 0.196 |
Rwork | 0.188 |
R-free | 0.26580 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6cu3 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MOLREP |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 42.751 | 42.751 | 2.770 |
High resolution limit [Å] | 2.700 | 12.070 | 2.700 |
Rmerge | 0.117 | 0.058 | 0.561 |
Rmeas | 0.134 | 0.067 | 0.640 |
Total number of observations | 80274 | ||
Number of reflections | 18861 | 224 | 1356 |
<I/σ(I)> | 9.41 | 22.11 | 2.79 |
Completeness [%] | 99.9 | 97.4 | 100 |
Redundancy | 4.256 | 3.714 | 4.305 |
CC(1/2) | 0.995 | 0.995 | 0.885 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 291 | 5.5 mg/mL NafoA.01523.a.B1.PW37976 against ProPlex screen condition F12 (1.5 M ammonium sulfate, 0.1 M sodium HEPES, pH 7.0), cryoprotectant: 20% ethylene glycol, crystal tracking ID 297887f12, unique puck ID bsj2-10 |