6CU2
Structure of N-truncated R2-type pyocin tail fiber at 2.6 angstrom resolution
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | Cu FINE FOCUS |
Temperature [K] | 120 |
Detector technology | IMAGE PLATE |
Collection date | 2017-10-25 |
Detector | RIGAKU RAXIS IV |
Wavelength(s) | 1.54 |
Spacegroup name | P 63 2 2 |
Unit cell lengths | 59.865, 59.865, 398.049 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 39.805 - 2.580 |
R-factor | 0.1974 |
Rwork | 0.194 |
R-free | 0.22870 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6ct8 |
RMSD bond length | 0.009 |
RMSD bond angle | 0.850 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER (2.6.0) |
Refinement software | PHENIX (1.10.1_2155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.620 |
High resolution limit [Å] | 2.580 | 7.000 | 2.580 |
Rmerge | 0.237 | 0.128 | 0.783 |
Rmeas | 0.240 | 0.130 | 0.825 |
Rpim | 0.041 | 0.024 | 0.253 |
Total number of observations | 433942 | ||
Number of reflections | 14554 | 919 | 660 |
<I/σ(I)> | 5.5 | ||
Completeness [%] | 99.8 | 99.9 | 96.5 |
Redundancy | 29.8 | 30.6 | 10 |
CC(1/2) | 0.998 | 0.772 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291 | 1:1 ratio of protein to precipitant (100mM HEPES pH 8.0, 1M Sodium acetate, 0.4mM LDAO) |