6CTX
Ternary complex crystal structure of DNA polymerase Beta with a dideoxy terminated primer with CBr2, beta, gamma dCTP analogue
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-06-12 |
Detector | RIGAKU SATURN 944 |
Wavelength(s) | 1.5418 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 50.815, 79.565, 55.502 |
Unit cell angles | 90.00, 107.78, 90.00 |
Refinement procedure
Resolution | 31.785 - 2.020 |
R-factor | 0.1803 |
Rwork | 0.177 |
R-free | 0.22860 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2fms |
RMSD bond length | 0.008 |
RMSD bond angle | 0.931 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.10.1_2155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.050 |
High resolution limit [Å] | 2.020 | 5.480 | 2.020 |
Rmerge | 0.086 | 0.053 | 0.461 |
Rmeas | 0.100 | 0.062 | 0.615 |
Rpim | 0.051 | 0.032 | 0.403 |
Total number of observations | 92674 | ||
Number of reflections | 27392 | 1424 | 1305 |
<I/σ(I)> | 10.1 | ||
Completeness [%] | 99.1 | 98.6 | 95.6 |
Redundancy | 3.4 | 3.6 | 1.9 |
CC(1/2) | 0.995 | 0.620 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291 | 16-18% PEG 3350 |