6CTU
Ternary complex crystal structure of DNA polymerase Beta with a dideoxy terminated primer with CFCL, beta, gamma dCTP analogue
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-05-07 |
Detector | RIGAKU SATURN 944 |
Wavelength(s) | 1.5418 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 50.810, 79.636, 55.483 |
Unit cell angles | 90.00, 107.78, 90.00 |
Refinement procedure
Resolution | 23.720 - 1.900 |
R-factor | 0.1735 |
Rwork | 0.171 |
R-free | 0.20640 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2fms |
RMSD bond length | 0.007 |
RMSD bond angle | 1.022 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.10.1_2155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.930 |
High resolution limit [Å] | 1.900 | 5.160 | 1.900 |
Rmerge | 0.057 | 0.031 | 0.415 |
Rmeas | 0.067 | 0.036 | 0.495 |
Rpim | 0.034 | 0.019 | 0.267 |
Total number of observations | 115951 | ||
Number of reflections | 31150 | 1687 | 1056 |
<I/σ(I)> | 9.1 | ||
Completeness [%] | 93.7 | 97.8 | 64.8 |
Redundancy | 3.7 | 3.7 | 3 |
CC(1/2) | 0.998 | 0.852 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291 | 16-18% PEG 3350 |