6CR4
Ternary complex crystal structure of DNA polymerase Beta with a dideoxy terminated primer with dATP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-07-14 |
Detector | RIGAKU SATURN 944 |
Wavelength(s) | 1.5418 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 50.847, 79.564, 55.647 |
Unit cell angles | 90.00, 107.69, 90.00 |
Refinement procedure
Resolution | 24.615 - 1.800 |
R-factor | 0.1752 |
Rwork | 0.173 |
R-free | 0.21350 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2fms |
RMSD bond length | 0.008 |
RMSD bond angle | 0.934 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.10.1_2155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.830 |
High resolution limit [Å] | 1.800 | 4.880 | 1.800 |
Rmerge | 0.052 | 0.034 | 0.337 |
Total number of observations | 124643 | ||
Number of reflections | 36632 | 2008 | 1006 |
<I/σ(I)> | 16.9 | ||
Completeness [%] | 93.3 | 99.1 | 52.1 |
Redundancy | 3.4 | 3.7 | 2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291 | 16-18% PEG 3350 |