6CQ3
Crystal structure of DNA dodecamer D(CGCGAATTCGCG)
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | ALS BEAMLINE 4.2.2 |
| Synchrotron site | ALS |
| Beamline | 4.2.2 |
| Temperature [K] | 100 |
| Detector technology | CMOS |
| Collection date | 2018-01-25 |
| Detector | RDI CMOS_8M |
| Wavelength(s) | 1.0008 |
| Spacegroup name | P 21 21 21 |
| Unit cell lengths | 24.330, 40.510, 65.030 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 34.384 - 1.300 |
| R-factor | 0.1506 |
| Rwork | 0.149 |
| R-free | 0.18860 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 8bna |
| RMSD bond length | 0.011 |
| RMSD bond angle | 1.298 |
| Data reduction software | XDS (2018/01/26) |
| Data scaling software | SCALA (3.3.22) |
| Phasing software | PHASER (2.5.7) |
| Refinement software | PHENIX ((1.13_2998: ???)) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 34.384 | 1.320 |
| High resolution limit [Å] | 1.300 | 1.300 |
| Rmerge | 0.047 | 0.753 |
| Rmeas | 0.054 | 0.887 |
| Rpim | 0.021 | 0.446 |
| Number of reflections | 16300 | 47 |
| <I/σ(I)> | 25.8 | 2.4 |
| Completeness [%] | 99.0 | 98.7 |
| Redundancy | 9.6 | 7.1 |
| CC(1/2) | 1.000 | 0.779 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 5.5 | 277 | 10% (v/v) 2-Methyl-2,4-pentanediol, 40mM Sodium cacodylate trihydrate, 20mM Hexammine cobalt(III) chloride, 40mM Lithium chloride, 20mM Magnesium chloride hexahydrate |






