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6CKT

Crystal structure of 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase from Legionella pneumophila Philadelphia 1

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 5.0.1
Synchrotron siteALS
Beamline5.0.1
Temperature [K]100
Detector technologyCCD
Collection date2018-02-07
DetectorADSC QUANTUM 315r
Wavelength(s)0.97741
Spacegroup nameH 3
Unit cell lengths101.730, 101.730, 70.980
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution37.428 - 1.800
R-factor0.1599
Rwork0.157
R-free0.18790
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3tk8 as per Morda
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwareMoRDa
Refinement softwarePHENIX ((dev_3026))
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]37.42837.4281.850
High resolution limit [Å]1.8008.0501.800
Rmerge0.0310.0180.450
Rmeas0.0350.0200.502
Number of reflections253362841881
<I/σ(I)>20.7748.853.03
Completeness [%]99.898.699.7
Redundancy5.0285.2395.126
CC(1/2)1.0000.9990.937
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP8285Optimization screen based on RigakuReagents JCSG+ screen B4 and Microlytic MCSG1 screen B4: 11% PEG 8000, 100Mm HEPES free acid/NaOH pH 7.0: LepnA.00002.a.B1.PS38381 at 20mg/ml: cryo: 25% EG: tray 298088d1: puck FVT5-8

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PDB entries from 2024-05-15

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