6CKT
Crystal structure of 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase from Legionella pneumophila Philadelphia 1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 5.0.1 |
Synchrotron site | ALS |
Beamline | 5.0.1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2018-02-07 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.97741 |
Spacegroup name | H 3 |
Unit cell lengths | 101.730, 101.730, 70.980 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 37.428 - 1.800 |
R-factor | 0.1599 |
Rwork | 0.157 |
R-free | 0.18790 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3tk8 as per Morda |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MoRDa |
Refinement software | PHENIX ((dev_3026)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 37.428 | 37.428 | 1.850 |
High resolution limit [Å] | 1.800 | 8.050 | 1.800 |
Rmerge | 0.031 | 0.018 | 0.450 |
Rmeas | 0.035 | 0.020 | 0.502 |
Number of reflections | 25336 | 284 | 1881 |
<I/σ(I)> | 20.77 | 48.85 | 3.03 |
Completeness [%] | 99.8 | 98.6 | 99.7 |
Redundancy | 5.028 | 5.239 | 5.126 |
CC(1/2) | 1.000 | 0.999 | 0.937 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8 | 285 | Optimization screen based on RigakuReagents JCSG+ screen B4 and Microlytic MCSG1 screen B4: 11% PEG 8000, 100Mm HEPES free acid/NaOH pH 7.0: LepnA.00002.a.B1.PS38381 at 20mg/ml: cryo: 25% EG: tray 298088d1: puck FVT5-8 |